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Files not transferring on restore

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I need a solution

So i am migrating a old File server from 2003 server to a new 2012 server. The 2003 server is running BE 12.5 and the new server is running BE2015. I did a full back up on tape of the 2003 server of just the data that is needed. I ran an inventory and catalog so i can restore the files to the new server.  Now when i do the restore the folders restore correctly however if there a files saved on the root of that directory none of the files transfer with it. I tried saving it to different locations and tried 2 other back up tapes to see if it was a back up issue. Any thoughts on solution to this this problem?

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